流式细胞生物信息学资源 Resources for flow cytometry bioinformatics

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The need for bioinformatics expertise in flow cytometry is increasing exponentially as the size and complexity of flow datasets grow. I thought it would be worthwhile to post links to some tools and resources that may be beneficial for bioinformaticians getting starting with flow cytometry. The list is highly biased and far from complete, so please feel free to add/comment.

Resources for flow cytometry bioinformatics

Community portals
ISAC http://isac-net.org/home.aspx
FlowCAP http://flowcap.flowsite.org

Data standards
ISAC standards page http://isac-net.org/Resources-for-Cytometrists/Data-Standards.aspx
FCS 3.1 http://isac-net.org/images/stories/documents/Standards/fcs3.1_normativespecification_20090813.pdf
Gating-ML http://flowcyt.sourceforge.net/gating
MIFlowCyt http://flowcyt.sourceforge.net/miflowcyt
Classification Results File Format (CLR) http://isac-net.org/PDFS/65/659585c7-9ef4-4152-829c-859aad25aafb.pdf

Parsers, core data access
CFCS library http://sourceforge.net/projects/flowcyt
flowCore http://bioconductor.org/packages/release/bioc/html/flowCore.html
Python FCM https://pythonhosted.org/fcm/

Unsupervised clustering/visualization
t-SNE https://lvdmaaten.github.io/tsne
VISNE http://www.c2b2.columbia.edu/danapeerlab/html/cyt.html
FLOCK http://sourceforge.net/projects/immportflock
SPADE http://www.bioconductor.org/packages/release/bioc/html/spade.html
CytoSPADE https://github.com/nolanlab/cytospade
Wanderlust http://www.c2b2.columbia.edu/danapeerlab/html/wanderlust.html
ACCENSE http://www.cellaccense.com
Phenograph http://www.c2b2.columbia.edu/danapeerlab/html/phenograph.html