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Edit, annotate and draw plasmid sequences.
Search for similar sequences to a nucleotide sequence from various databases.
Compare two nucleotide or protein sequences using a local alignment algorithm.
Compare your query sequence to DNA sequence or protein products of Caenorhabditis elegans or Caenorhabditis briggsae
Compare your query sequence to DNA sequences mapped in, or associated with, plant genomes.
Compare your query sequence to DNA sequence or protein products from Drosophila melanogaster or from Anopheles gambiae genomes.
BLAST your sequence against the Japanese pufferfish, Fugu rubripes (‘torafugu’), the smallest known genome among vertebrates.
Compare your query sequence to the working draft sequence of the human genome or its mRNA and protein products.
Quickly find sequences of 95% and greater similarity of length 40 bases or more for DNA or 80% and greater similarity of length 20 amino acids or more for protein in a genome.
To blast the rat genome with options to limit the blast against specific chromosomes.
Detect repetitive sequence in a query DNA sequence by screening it against a collection of repeats.
Find regions suspected of containing coding sequences and visualize nucleotide diversity between two genomic or gene sequences.
Generate random sequences based on measured long-range correlations in the base composition of a given DNA.
Generate a three-dimensional representation for a given RNA or DNA sequence alignment.
Align multiple DNA or protein sequences.
Predict hybridization, folding and melting profiles for two strands of DNA or RNA.
Use a collection of methods to analyze and graphically represent various DNA parameters.
Conduct a variety of analysis of DNA and protein sequences.
Generate images of circular and linear DNA maps to display regions and features of interest.
Use this blast tool to blast query sequence against your own collection of sequences.
Provides a permanent archive for single-pass DNA sequencing reads and associated traces and quality values.
Compare physico-chemical properties of different DNA sequences.
Conduct exhaustive sequence alignment for comparative analysis of two non-coding DNA sequences.
Evaluate the accuracy of multiple sequence alignment.
Predict the genetic code of metazoan mitochondria.
Conduct multiple alignments and subsequent quality evaluation.
Web server that computes multiple sequence alignments (MSAs) by running several MSA methods and combining their output into one single model.
Analyze miniature inverted repeat transposable elements (MITEs)in higher eukaryotic genomes.
Visualize the short reads alignment, identify the genetic variation and associate with the annotation information of reference genome.
Provides DNA chromatogram and alignment views, facilitates evaluation of predictions and supports direct manual annotation.
Conduct statistical selection of nucleotide substitution models.
Explore a comprehensive map of regulatory elements in the human genome.
A novel ensemble method for fine-grained integration of generic motif finders.
Align multiple, long genomic DNA sequences quickly and with good sensitivity.
Find information about patented nucleotide and protein sequences.
Find similar proteins to the translated query in a PROTEIN database. Blastx compares the translation of the nucleotide query sequence to a protein database
Search for putative 3′-processing sites and 3′-UTR sequences for multiple model organisms.
Identify distantly related sequences in both nucleotide and amino acid sequence databases.
Calculate maximum likelihood phylogenies from DNA and protein sequences.
